Basic Information
Locus ID:
Cgl02G0856
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 7273276 | 7278191 | - | Cgl02G0856 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.48 | 46,810.01 Da | 46.69 | 91.06 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17939 | DEADc_EIF4A | 46 | 243 | 2.75234E-134 | - |
| CDD | cd18787 | SF2_C_DEAD | 254 | 384 | 1.2205E-60 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 66 | 227 | 1.4E-40 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 267 | 375 | 7.1E-29 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 110 | 395 | 9.7E-75 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 31 | 249 | 1.6E-67 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 250 | 414 | 4.4E-58 | IPR027417 |
| SMART | SM00490 | helicmild6 | 294 | 375 | 2.9E-31 | IPR001650 |
| SMART | SM00487 | ultradead3 | 60 | 257 | 1.2E-56 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 72 | 242 | 28.975178 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 253 | 414 | 25.974945 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 41 | 69 | 10.720899 | IPR014014 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 188 | 196 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.1 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 0 |
| RefSeq | XP_041017572.1 | eukaryotic initiation factor 4A-15 [Juglans microcarpa x Juglans regia] | 0 |
| P41381 | Eukaryotic initiation factor 4A-8 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6QIU4 | Eukaryotic initiation factor 4A-11 OS=Carpinus fangiana OX=176857 GN=FH972_003556 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology