Basic Information
Locus ID:
Cgl02G0802
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 6708659 | 6714326 | - | Cgl02G0802 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.66 | 45,937.18 Da | 48.93 | 73.13 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12619 | RRM2_PUB1 | 139 | 213 | 2.38047E-53 | - |
| CDD | cd12354 | RRM3_TIA1_like | 259 | 334 | 2.33744E-34 | - |
| CDD | cd12352 | RRM1_TIA1_like | 55 | 125 | 1.41442E-36 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 261 | 318 | 1.4E-10 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 55 | 121 | 1.4E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 140 | 210 | 1.3E-17 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 133 | 218 | 1.75E-26 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 251 | 343 | 1.26E-19 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 37 | 131 | 9.67E-24 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 236 | 338 | 2.5E-21 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 137 | 217 | 3.7E-24 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 136 | 4.6E-24 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 260 | 330 | 6.1E-15 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 139 | 212 | 9.3E-24 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 54 | 123 | 3.1E-17 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 138 | 216 | 17.267626 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 53 | 127 | 15.357421 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 259 | 334 | 14.436429 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 217 | 256 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 256 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_041001526.1 | oligouridylate-binding protein 1B-like isoform X2 [Juglans microcarpa x Juglans regia] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A2I4G5R2 | oligouridylate-binding protein 1B-like isoform X2 OS=Juglans regia OX=51240 GN=LOC109004964 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology