Basic Information
Locus ID:
Cgl02G0798
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
peroxisomal (S)-2-hydroxy-acid oxidase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 6661542 | 6677579 | + | Cgl02G0798 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.05 | 84,282.22 Da | 39.64 | 90.47 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02809 | alpha_hydroxyacid_oxid_FMN | 447 | 748 | 8.99727E-137 | IPR012133 |
| Pfam | PF01070 | FMN-dependent dehydrogenase | 447 | 752 | 1.3E-120 | IPR000262 |
| Pfam | PF02037 | SAP domain | 62 | 95 | 4.7E-10 | IPR003034 |
| Pfam | PF02037 | SAP domain | 170 | 203 | 2.4E-9 | IPR003034 |
| SUPERFAMILY | SSF68906 | SAP domain | 159 | 204 | 2.56E-7 | IPR036361 |
| SUPERFAMILY | SSF51395 | FMN-linked oxidoreductases | 427 | 751 | 5.07E-88 | - |
| SUPERFAMILY | SSF68906 | SAP domain | 52 | 95 | 1.01E-7 | IPR036361 |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 445 | 761 | 4.9E-141 | IPR013785 |
| Gene3D | G3DSA:1.10.720.30 | SAP domain | 61 | 98 | 1.3E-6 | IPR036361 |
| Gene3D | G3DSA:1.10.720.30 | SAP domain | 161 | 218 | 2.7E-7 | IPR036361 |
| SMART | SM00513 | sap_9 | 170 | 204 | 0.026 | IPR003034 |
| SMART | SM00513 | sap_9 | 62 | 96 | 2.5E-4 | IPR003034 |
| ProSiteProfiles | PS50800 | SAP motif profile. | 62 | 96 | 9.826293 | IPR003034 |
| ProSiteProfiles | PS51349 | FMN-dependent alpha-hydroxy acid dehydrogenase domain profile. | 447 | 756 | 96.632965 | IPR037396 |
| ProSiteProfiles | PS50800 | SAP motif profile. | 170 | 204 | 9.3269 | IPR003034 |
| ProSitePatterns | PS00557 | FMN-dependent alpha-hydroxy acid dehydrogenases active site. | 649 | 655 | - | IPR008259 |
Gene Ontology
KEGG Pathway
Pathway:
ko00630 (Glyoxylate and dicarboxylate metabolism)
map00630 (Glyoxylate and dicarboxylate metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01120 (Microbial metabolism in diverse environments)
map01120 (Microbial metabolism in diverse environments)
ko01200 (Carbon metabolism)
map01200 (Carbon metabolism)
ko04146 (Peroxisome)
map04146 (Peroxisome)
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14130.1 | Aldolase-type TIM barrel family protein. | 0 |
| RefSeq | XP_023920719.1 | peroxisomal (S)-2-hydroxy-acid oxidase GLO4-like isoform X1 [Quercus suber] | 0 |
| Q9LJH5 | Peroxisomal (S)-2-hydroxyacid oxidase GLO4 OS=Arabidopsis thaliana OX=3702 GN=GLO4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6QI54 | (S)-2-hydroxy-acid oxidase OS=Carpinus fangiana OX=176857 GN=FH972_003505 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg25171, jg40061 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_23921, gene_6699 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah027382, Ah028742 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_6g134430, BVRB_7g169630 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg12981, Sbi_jg2007, Sbi_jg34496, Sbi_jg52889 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg2760, Seu_jg8974 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00002809, GOSA_00010258, GOSA_00010259 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl33977, Sgl39374, Sgl73433, Sgl76958 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000001526, gene:ENSEOMG00000003453 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.6AG0024790, CQ.Regalona.r1.6BG0026200 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30118780, pistato.v30119480 |
| Apiaceae | Apium graveolens | 2 | Ag4G00214, Ag4G01072 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G007000, COCNU_13G002020 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103701803, gene-LOC103714820, gene-LOC120113292 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1911.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G14469, Ftri1G06395 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G66840.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10004096m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g29820.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g014880.2N, BniB03g069890.2N, BniB07g044010.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0785 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0798 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno09g01680, gene.Cymno09g03870 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate04g13270, gene.Thate05g25930 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-10029, nbisL1-mrna-4604 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2177 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00023958 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G05820, Lb1G05823 |
| Poaceae | Echinochloa crus-galli | 6 | AH01.2277, AH03.3719, BH01.2626, BH03.4000, CH01.2793 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2BG0178220, gene-QOZ80_7AG0577500 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0124400.1, HORVU.MOREX.r3.5HG0438120.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_031144, gene-QYE76_039466, gene-QYE76_039711 |
| Poaceae | Oryza coarctata | 2 | Oco13G012880, Oco14G013580 |
| Poaceae | Oryza sativa | 2 | LOC_Os07g42760.1, LOC_Os10g25220.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G237100, gene-BS78_02G352700 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0205041, Pt_Chr0205044, Pt_Chr0502389 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr06G014730, Chr19G002110, Chr24G015100, Chr27G015140 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G326600, Tel5E01G139200 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG021020, gene_TRIDC2BG024920 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G165900.1, TraesCS2B02G191900.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb109490_P003, Zm00001eb266680_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-352 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g6870 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG05.591, evm.TU.LG19.111, evm.TU.LG24.331 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g03590 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.1442 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-6733 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17115 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11885 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.1158 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00004241, Maker00008319 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-15521, nbisL1-mrna-4106 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-3192, nbisL1-mrna-8300 |
| Salicaceae | Populus euphratica | 2 | populus_peu14323, populus_peu33812 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132621687, gene-LOC132645278 |
| Solanaceae | Solanum chilense | 2 | SOLCI004246900, SOLCI007273500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107009297, gene-LOC107021719 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.5420_chr03_-, STRG.8762_chr03_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G1697, TC11G0497 |
| Zosteraceae | Zostera marina | 2 | Zosma01g10070.v3.1, Zosma06g04630.v3.1 |