Basic Information
Locus ID:
Cgl02G0580
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 4936742 | 4940221 | - | Cgl02G0580 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.47 | 67,988.32 Da | 30.12 | 103.24 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 248 | 290 | 8.64983E-28 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 455 | 492 | 4.1E-5 | IPR000225 |
| Pfam | PF04564 | U-box domain | 244 | 314 | 9.7E-21 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 371 | 410 | 3.4E-10 | IPR000225 |
| SUPERFAMILY | SSF57850 | RING/U-box | 243 | 319 | 2.3E-30 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 341 | 612 | 2.11E-49 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 454 | 616 | 3.0E-27 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 6 | 118 | 4.8E-10 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 320 | 453 | 1.6E-27 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 244 | 317 | 2.9E-30 | IPR013083 |
| SMART | SM00185 | arm_5 | 494 | 534 | 17.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 371 | 411 | 6.3E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 453 | 493 | 4.2 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 247 | 310 | 6.9E-34 | IPR003613 |
| SMART | SM00185 | arm_5 | 535 | 575 | 20.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 412 | 452 | 0.032 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 382 | 424 | 13.1774 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 243 | 317 | 42.868027 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54850.1 | plant U-box 14. Encodes a protein with a typical U-box domain followed by an Armadillo repeat region, a domain organization that is frequently found in plant U-box proteins. Displays ubiquitin ligase activity in vitro. | 0 |
| RefSeq | XP_030930334.1 | U-box domain-containing protein 14-like [Quercus lobata] | 0 |
| Q8VZ40 | U-box domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=PUB14 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2D1WBB1 | RING-type E3 ubiquitin transferase OS=Corylus heterophylla x Corylus avellana OX=2044890 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology