Basic Information
Locus ID:
Cgl02G0367
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 3002372 | 3012677 | - | Cgl02G0367 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.80 | 125,105.04 Da | 38.57 | 79.77 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 923 | 956 | 0.016 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 457 | 491 | 4.7E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 353 | 666 | 1.65E-41 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 839 | 1100 | 2.2E-33 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 841 | 1127 | 1.2E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 547 | 694 | 6.2E-13 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 331 | 546 | 6.5E-31 | IPR015943 |
| SMART | SM00320 | WD40_4 | 917 | 956 | 4.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 874 | 914 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 584 | 624 | 0.58 | IPR001680 |
| SMART | SM00320 | WD40_4 | 450 | 491 | 1.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1007 | 1047 | 6.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 344 | 383 | 5.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 835 | 871 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 494 | 535 | 0.033 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 5.3E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 405 | 444 | 28.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 538 | 581 | 22.0 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 1.2E-15 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 457 | 500 | 10.775796 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.24683 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 924 | 956 | 9.414692 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 924 | 956 | 11.243651 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 602 | 633 | 8.770704 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 14.141059 | IPR006595 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 286 | 306 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1108 | 1137 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1113 | 1137 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.2 | TOPLESS-related 1. | 0 |
| RefSeq | XP_018836900.1 | protein TOPLESS isoform X2 [Juglans regia] | 0 |
| Q0WV90 | Topless-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=TPR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A5N6QDB1 | TOPLESS OS=Carpinus fangiana OX=176857 GN=FH972_001935 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology