Basic Information
Locus ID:
Cgl02G0338
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 2758894 | 2774689 | - | Cgl02G0338 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.22 | 163,477.16 Da | 41.87 | 86.29 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02205 | CBS_pair_SF | 1282 | 1412 | 7.01416E-4 | - |
| Pfam | PF00571 | CBS domain | 1447 | 1481 | 0.0047 | IPR000644 |
| Pfam | PF00400 | WD domain, G-beta repeat | 892 | 926 | 0.047 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 431 | 465 | 0.0012 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 326 | 649 | 1.06E-37 | IPR036322 |
| SUPERFAMILY | SSF54631 | CBS-domain pair | 1160 | 1331 | 6.57E-8 | - |
| SUPERFAMILY | SSF54631 | CBS-domain pair | 1319 | 1482 | 3.74E-17 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 814 | 1072 | 1.3E-35 | IPR036322 |
| Gene3D | G3DSA:3.10.580.10 | - | 1142 | 1338 | 7.2E-7 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 291 | 519 | 1.9E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 812 | 1079 | 1.2E-26 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 520 | 780 | 9.3E-7 | IPR015943 |
| Gene3D | G3DSA:3.10.580.10 | - | 1339 | 1489 | 4.9E-15 | - |
| SMART | SM00320 | WD40_4 | 804 | 841 | 23.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 978 | 1019 | 43.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 424 | 465 | 1.0E-4 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 0.0015 | IPR006594 |
| SMART | SM00320 | WD40_4 | 512 | 555 | 43.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 379 | 419 | 16.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 557 | 598 | 23.0 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 2.8E-13 | IPR006595 |
| SMART | SM00320 | WD40_4 | 844 | 884 | 12.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 468 | 509 | 0.05 | IPR001680 |
| SMART | SM00320 | WD40_4 | 319 | 358 | 3.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 887 | 926 | 9.7E-5 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.198306 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 894 | 935 | 11.611251 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 431 | 474 | 11.07656 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 431 | 469 | 8.623787 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 894 | 928 | 9.599237 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 9.586046 | IPR006594 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 452 | 466 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1088 | 1109 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.1 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_017979145.1 | PREDICTED: topless-related protein 4 isoform X2 [Theobroma cacao] | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6J1BG90 | topless-related protein 4-like isoform X3 OS=Herrania umbratica OX=108875 GN=LOC110427074 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg18248 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21400 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010557 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g219480 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11579, Sbi_jg46520 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20832 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00005160, GOSA_00005161 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl56389, Sgl61920 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000018961, gene:ENSEOMG00000038810 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0009790, CQ.Regalona.r1.9AG0014840 |
| Apiaceae | Apium graveolens | 5 | Ag5G01567, Ag9G01173, Ag9G01176, AgUnG01435, AgUnG01437 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G000070 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103710138 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.1583.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri1G01751 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G15330.1, AT1G80090.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10008048m.g.v1.0, Thhalv10019455m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g13650.v2.2, Sp5g35710.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g040650.2N, BniB06g068750.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0324 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0338 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.489 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00027744 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb7G34090, Lb7G34356 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.424, BH07.549, CH07.411 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0102130, gene-QOZ80_2BG0155470 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0564660.1 |
| Poaceae | Oryza coarctata | 2 | Oco03G002840, Oco04G002820 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g06410.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G043900, gene-BS78_K002300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0202563, Pt_Chr0202581 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G258400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG017850, gene_TRIDC6BG023620 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G132700.1, TraesCS6B02G160900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb232620_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-33705, nbis-gene-33706 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g12214 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG06.1255, evm.TU.LG07.1779, evm.TU.LG11.603 ... |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-3652 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11576 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21762 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000004l.331 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004095 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16326 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21393 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132598778 |
| Solanaceae | Solanum chilense | 1 | SOLCI003611400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107022738 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10150 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G2212 |
| Zosteraceae | Zostera marina | 1 | Zosma06g25850.v3.1 |