Basic Information
Locus ID:
Cgl02G0012
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
WD repeat domain phosphoinositide-interacting protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr02 | 103027 | 113917 | + | Cgl02G0012 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.17 | 78,741.77 Da | 43.40 | 80.68 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01433 | Ribosomal_L16_L10e | 528 | 653 | 1.44764E-45 | IPR016180 |
| Pfam | PF00252 | Ribosomal protein L16p/L10e | 499 | 653 | 5.0E-35 | IPR016180 |
| SUPERFAMILY | SSF54686 | Ribosomal protein L16p/L10e | 492 | 660 | 2.22E-73 | IPR036920 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 52 | 297 | 3.0E-29 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 54 | 397 | 2.1E-16 | IPR015943 |
| Gene3D | G3DSA:3.90.1170.10 | Ribosomal protein L10e/L16 | 490 | 700 | 1.7E-111 | IPR036920 |
| SMART | SM00320 | WD40_4 | 254 | 295 | 0.086 | IPR001680 |
| SMART | SM00320 | WD40_4 | 211 | 251 | 0.6 | IPR001680 |
| TIGRFAM | TIGR00279 | uL16_euk_arch: ribosomal protein uL16 | 492 | 660 | 4.9E-75 | IPR001197 |
| ProSitePatterns | PS01257 | Ribosomal protein L10e signature. | 595 | 616 | - | IPR018255 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G56440.1 | homolog of yeast autophagy 18 (ATG18) D. | 0 |
| RefSeq | XP_050250993.1 | autophagy-related protein 18c [Quercus robur] | 0 |
| Q0WPK3 | Autophagy-related protein 18d OS=Arabidopsis thaliana OX=3702 GN=ATG18D PE=2 SV=1 | 0 | |
| TrEMBL | A0A8J4R8T8 | Autophagy-related protein 18c OS=Castanea mollissima OX=60419 GN=CMV_010018 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology