Basic Information
Locus ID:
Cgl01G2721
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 38546450 | 38556505 | + | Cgl01G2721 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.96 | 145,542.05 Da | 50.59 | 75.18 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 537 | 861 | 1.22658E-85 | - |
| CDD | cd18793 | SF2_C_SNF | 1132 | 1243 | 2.55931E-53 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1133 | 1233 | 7.6E-16 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 558 | 938 | 2.5E-69 | IPR000330 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 977 | 1013 | 1.4E-5 | IPR018957 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 869 | 1293 | 3.29E-56 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 522 | 861 | 1.61E-43 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 974 | 1020 | 9.56E-11 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 876 | 1316 | 7.7E-63 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 626 | 715 | 3.1E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 716 | 874 | 6.9E-30 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 970 | 1027 | 7.3E-10 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 508 | 602 | 1.3E-10 | IPR038718 |
| SMART | SM00490 | helicmild6 | 1150 | 1233 | 3.9E-18 | IPR001650 |
| SMART | SM00487 | ultradead3 | 533 | 838 | 4.5E-27 | IPR014001 |
| SMART | SM00184 | ring_2 | 977 | 1015 | 0.0075 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 552 | 823 | 12.294704 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1127 | 1286 | 14.751378 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 977 | 1013 | 10.232069 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 992 | 1001 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 710 | 731 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 710 | 747 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 475 | 502 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 475 | 494 | - | - |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_041026547.1 | helicase-like transcription factor CHR28 [Juglans microcarpa x Juglans regia] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6QBP2 | Helicase-like transcription factor CHR28 OS=Carpinus fangiana OX=176857 GN=FH972_000389 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology