Basic Information
Locus ID:
Cgl01G2704
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 38345727 | 38355609 | - | Cgl01G2704 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.23 | 112,433.32 Da | 42.64 | 77.12 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 8 | 294 | 2.72008E-66 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 134 | 170 | 2.1E-9 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 174 | 212 | 1.7E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 7 | 43 | 0.0068 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 847 | 1005 | 4.4E-51 | IPR028021 |
| Pfam | PF00400 | WD domain, G-beta repeat | 92 | 128 | 5.4E-8 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 6 | 295 | 1.26E-71 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 165 | 317 | 3.8E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 164 | 7.1E-43 | IPR015943 |
| SMART | SM00320 | WD40_4 | 215 | 253 | 0.087 | IPR001680 |
| SMART | SM00320 | WD40_4 | 131 | 170 | 1.6E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 47 | 86 | 0.0078 | IPR001680 |
| SMART | SM00320 | WD40_4 | 89 | 128 | 2.1E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 4 | 44 | 4.4E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 173 | 212 | 1.4E-8 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 54 | 95 | 12.780889 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 96 | 137 | 15.487762 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 54 | 88 | 9.704691 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 11 | 53 | 10.608706 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 138 | 175 | 13.47467 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 96 | 130 | 12.182859 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 180 | 215 | 11.866497 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 180 | 221 | 14.919653 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 138 | 179 | 17.426018 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 157 | 171 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 199 | 213 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 157 | 171 | 3.2E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 199 | 213 | 3.2E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 115 | 129 | 3.2E-7 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 1 | 1008 | 19.336466 | IPR026962 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 415 | 462 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 490 | 514 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 489 | 525 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 379 | 400 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 426 | 440 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 627 | 641 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 622 | 641 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61210.3 | - | 0 |
| RefSeq | XP_050286826.1 | katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.1-like isoform X1 [Quercus robur] | 0 |
| F4HTH8 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.2 OS=Arabidopsis thaliana OX=3702 GN=KTN80.2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7N2LNC6 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Quercus lobata OX=97700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology