Basic Information
Locus ID:
Cgl01G2632
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 37483519 | 37493088 | - | Cgl01G2632 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.75 | 106,949.48 Da | 55.81 | 77.27 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07521 | HAD_FCP1-like | 250 | 366 | 3.94093E-20 | - |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 256 | 365 | 9.8E-7 | IPR004274 |
| SUPERFAMILY | SSF56784 | HAD-like | 136 | 392 | 2.66E-19 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 845 | 919 | 1.65E-12 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 710 | 775 | 1.98E-8 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 840 | 919 | 1.7E-7 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 137 | 395 | 2.0E-26 | IPR023214 |
| SMART | SM00577 | forpap2 | 199 | 375 | 2.3E-17 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 846 | 914 | 1.1E-4 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 710 | 774 | 3.5E-5 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 709 | 775 | 10.023275 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 845 | 915 | 10.703012 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 140 | 388 | 16.204063 | IPR004274 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 524 | 596 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 467 | 484 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 921 | 942 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 544 | 572 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 818 | 839 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 673 | 695 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 463 | 484 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_042941675.1 | RNA polymerase II C-terminal domain phosphatase-like 1 isoform X1 [Carya illinoinensis] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6Q8S5 | protein-serine/threonine phosphatase OS=Carpinus fangiana OX=176857 GN=FH972_000412 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology