Basic Information
Locus ID:
Cgl01G2599
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 37099383 | 37107057 | + | Cgl01G2599 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.73 | 55,306.38 Da | 47.64 | 68.77 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 62 | 112 | 1.23201E-26 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 64 | 110 | 6.0E-8 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 60 | 123 | 1.81E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 49 | 124 | 1.7E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 64 | 110 | 1.7E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 64 | 111 | 12.754832 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 79 | 88 | - | IPR017907 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27470.1 | RING membrane-anchor 3. Encodes a RING finger E3 ubiquitin ligase. | 0 |
| RefSeq | XP_041026576.1 | E3 ubiquitin-protein ligase RMA1H1-like isoform X1 [Juglans microcarpa x Juglans regia] | 0 |
| Q6R567 | E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1B1LZW2 | RING-type E3 ubiquitin transferase OS=Betula platyphylla OX=78630 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology