Basic Information
Locus ID:
Cgl01G2516
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
FBD
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 36134155 | 36141214 | - | Cgl01G2516 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.99 | 45,834.39 Da | 40.46 | 92.60 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 18 | 56 | 5.8E-9 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 17 | 69 | 4.71E-11 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 138 | 231 | 8.63E-6 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 6 | 58 | 8.2E-9 | - |
| SMART | SM00256 | fbox_2 | 22 | 63 | 1.1E-4 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 16 | 66 | 12.014438 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G15620.1 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_007203371.2 | putative F-box/LRR-repeat protein At3g59170 [Prunus persica] | 0 |
| Q9LF20 | Putative F-box/LRR-repeat protein At5g15620 OS=Arabidopsis thaliana OX=3702 GN=At5g15620 PE=4 SV=2 | 0 | |
| TrEMBL | A0A5N6QSQ3 | F-box domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_005420 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G2233, Ceq07G1992 |
| Casuarinaceae | Casuarina glauca | 4 | Cgl01G2490, Cgl01G2516, Cgl01G2517, Cgl07G2181 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.795 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13688 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11911 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9044 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000004l.124 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003964 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18265 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7920 |
| Salicaceae | Populus euphratica | 5 | populus_peu09581, populus_peu12799, populus_peu12841 ... |