Basic Information
Locus ID:
Cgl01G2080
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
Belongs to the histone deacetylase family. HD Type 1 subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 31487772 | 31491582 | + | Cgl01G2080 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.14 | 55,301.42 Da | 41.07 | 75.64 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09991 | HDAC_classI | 58 | 365 | 0.0 | - |
| Pfam | PF00850 | Histone deacetylase domain | 72 | 363 | 2.4E-85 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 53 | 418 | 6.71E-124 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 51 | 426 | 9.9E-136 | IPR037138 |
| PIRSF | PIRSF037913 | HDAC_I_euk | 37 | 494 | 2.5E-205 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 300 | 310 | 2.3E-24 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 215 | 230 | 2.3E-24 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 183 | 206 | 2.3E-24 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 140 | 157 | 3.8E-59 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 161 | 181 | 3.8E-59 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 278 | 296 | 3.8E-59 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 107 | 125 | 3.8E-59 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 74 | 91 | 3.8E-59 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 261 | 274 | 3.8E-59 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 202 | 218 | 3.8E-59 | IPR003084 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 419 | 495 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 462 | 477 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 422 | 436 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63110.1 | histone deacetylase 6. RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing. | 0 |
| RefSeq | XP_018837700.1 | histone deacetylase 6-like [Juglans regia] | 0 |
| Q9FML2 | Histone deacetylase 6 OS=Arabidopsis thaliana OX=3702 GN=HDA6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6RPJ0 | Histone deacetylase OS=Carpinus fangiana OX=176857 GN=FH972_019197 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology