Basic Information
Locus ID:
Cgl01G1833
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 28986837 | 28987538 | - | Cgl01G1833 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.75 | 26,354.83 Da | 60.30 | 84.85 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 184 | 226 | 4.12983E-16 | - |
| Pfam | PF13639 | Ring finger domain | 183 | 226 | 3.2E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 167 | 231 | 2.59E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 149 | 232 | 8.4E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 185 | 225 | 6.5E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 185 | 226 | 12.326995 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18770.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_040990682.1 | RING-H2 finger protein ATL7-like [Juglans microcarpa x Juglans regia] | 0 |
| P0CH30 | E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6R0F2 | RING-type domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_008015 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Casuarinaceae | Casuarina equisetifolia | 5 | Ceq01G1673, Ceq01G1674, Ceq02G2197, Ceq02G2208, Ceq09G0347 |
| Casuarinaceae | Casuarina glauca | 4 | Cgl01G1832, Cgl01G1833, Cgl01G1834, Cgl01G2060 |