Basic Information
Locus ID:
Cgl01G1764
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
DNA repair protein recA homolog 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 28127481 | 28135478 | + | Cgl01G1764 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.42 | 47,027.54 Da | 33.79 | 85.31 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00983 | recA | 79 | 404 | 0.0 | IPR013765 |
| Pfam | PF00154 | recA bacterial DNA recombination protein | 82 | 343 | 1.0E-117 | IPR013765 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 345 | 401 | 9.03E-18 | IPR023400 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 80 | 343 | 9.55E-54 | IPR027417 |
| Gene3D | G3DSA:3.30.250.10 | - | 345 | 403 | 2.5E-21 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 102 | 343 | 8.6E-79 | IPR027417 |
| SMART | SM00382 | AAA_5 | 131 | 302 | 6.5E-9 | IPR003593 |
| TIGRFAM | TIGR02012 | tigrfam_recA: protein RecA | 79 | 399 | 1.2E-143 | IPR013765 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 110 | 268 | 28.809511 | IPR020588 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 273 | 348 | 27.862307 | IPR020587 |
| ProSitePatterns | PS00321 | recA signature. | 287 | 295 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 201 | 230 | 7.1E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 167 | 196 | 7.1E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 239 | 268 | 7.1E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 373 | 390 | 7.1E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 319 | 348 | 7.1E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 284 | 312 | 7.1E-75 | IPR013765 |
| Hamap | MF_00268 | Protein RecA [recA]. | 80 | 405 | 44.996338 | IPR013765 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79050.1 | recA DNA recombination family protein. | 0 |
| RefSeq | XP_040986600.1 | DNA repair protein recA homolog 1, chloroplastic isoform X1 [Juglans microcarpa x Juglans regia] | 0 |
| Q39199 | DNA repair protein recA homolog 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RECA PE=2 SV=1 | 0 | |
| TrEMBL | A0A2I4F626 | DNA repair protein recA homolog 1, chloroplastic isoform X1 OS=Juglans regia OX=51240 GN=LOC108995892 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology