Basic Information
Locus ID:
Cgl01G1699
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 27386148 | 27391512 | - | Cgl01G1699 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.77 | 50,528.77 Da | 33.43 | 78.01 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 189 | 222 | 0.0022 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 315 | 348 | 9.4E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 353 | 387 | 0.2 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 183 | 402 | 5.76E-30 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 303 | 419 | 3.6E-17 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 174 | 290 | 4.1E-12 | IPR015943 |
| SMART | SM00356 | c3hfinal6 | 154 | 178 | 0.073 | IPR000571 |
| SMART | SM00320 | WD40_4 | 351 | 388 | 0.14 | IPR001680 |
| SMART | SM00320 | WD40_4 | 183 | 222 | 1.3E-4 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 39 | 62 | 0.0028 | IPR000571 |
| SMART | SM00320 | WD40_4 | 310 | 348 | 2.8E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 190 | 222 | 11.611251 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 317 | 357 | 11.009724 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 190 | 222 | 9.704691 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 317 | 348 | 8.65015 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 152 | 179 | 11.985751 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 37 | 63 | 12.267424 | IPR000571 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 414 | 442 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 416 | 437 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_030965983.1 | zinc finger CCCH domain-containing protein 17-like [Quercus lobata] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7N2R3M9 | Zinc finger CCCH domain-containing protein 48-like OS=Quercus lobata OX=97700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology