Basic Information
Locus ID:
Cgl01G1612
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 26692374 | 26705688 | - | Cgl01G1612 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.64 | 179,247.38 Da | 35.69 | 105.83 | 0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 300 | 587 | 3.4584E-106 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1240 | 1437 | 6.75428E-114 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 613 | 813 | 9.22745E-110 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 923 | 1217 | 8.55317E-88 | IPR044726 |
| Pfam | PF00664 | ABC transporter transmembrane region | 934 | 1169 | 2.0E-27 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1260 | 1407 | 4.7E-30 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 299 | 566 | 3.2E-24 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 631 | 765 | 9.1E-21 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1473 | 1552 | 1.81E-12 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 923 | 1223 | 3.01E-50 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1234 | 1437 | 1.31E-58 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 613 | 835 | 1.28E-56 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 292 | 597 | 3.53E-33 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 277 | 594 | 2.5E-48 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 595 | 857 | 7.0E-76 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1225 | 1462 | 2.7E-72 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1466 | 1566 | 1.6E-11 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 888 | 1223 | 2.2E-60 | IPR036640 |
| SMART | SM00382 | AAA_5 | 640 | 813 | 4.3E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1268 | 1454 | 5.7E-12 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 613 | 836 | 22.689182 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 925 | 1205 | 34.23851 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1244 | 1477 | 15.192888 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 299 | 579 | 32.162182 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 738 | 752 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_040987171.1 | ABC transporter C family member 3-like isoform X4 [Juglans microcarpa x Juglans regia] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2I4E0G7 | ABC-type xenobiotic transporter OS=Juglans regia OX=51240 GN=LOC108985153 PE=3 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology