Basic Information
Locus ID:
Cgl01G1610
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 26681474 | 26686898 | - | Cgl01G1610 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 106,030.91 Da | 42.48 | 98.53 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 93 | 241 | 4.53659E-84 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 352 | 601 | 7.44153E-57 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 624 | 850 | 1.62995E-112 | - |
| Pfam | PF00005 | ABC transporter | 644 | 797 | 2.6E-26 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 107 | 193 | 3.2E-9 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 414 | 553 | 2.2E-12 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 618 | 857 | 4.94E-58 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 102 | 263 | 1.43E-41 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 408 | 607 | 9.81E-31 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 86 | 285 | 2.5E-56 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 609 | 868 | 7.1E-72 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 317 | 607 | 8.6E-36 | IPR036640 |
| SMART | SM00382 | AAA_5 | 134 | 241 | 3.6 | IPR003593 |
| SMART | SM00382 | AAA_5 | 652 | 843 | 4.6E-12 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 628 | 866 | 17.060293 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 409 | 589 | 18.572876 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 25 | 264 | 17.893955 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 166 | 180 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 938 | 958 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 896 | 924 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 304 | 324 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_040987168.1 | ABC transporter C family member 3-like isoform X1 [Juglans microcarpa x Juglans regia] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6RVQ6 | ABC-type xenobiotic transporter OS=Carpinus fangiana OX=176857 GN=FH972_020221 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology