Basic Information
Locus ID:
Cgl01G1609
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 26644655 | 26672758 | - | Cgl01G1609 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 306,182.28 Da | 36.80 | 106.50 | 0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 159 | 439 | 1.02872E-80 | IPR044726 |
| CDD | cd03250 | ABCC_MRP_domain1 | 1324 | 1524 | 6.26966E-109 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 462 | 682 | 1.61943E-120 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 1636 | 1922 | 1.19866E-77 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 2491 | 2741 | 4.14819E-92 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 2265 | 2468 | 3.76256E-46 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 1011 | 1298 | 3.53796E-96 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1945 | 2174 | 1.03557E-115 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 1638 | 1835 | 5.8E-22 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 482 | 629 | 9.3E-30 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1965 | 2112 | 8.5E-30 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 1009 | 1263 | 5.1E-23 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 2265 | 2420 | 1.6E-5 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1342 | 1476 | 6.3E-21 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 147 | 389 | 1.5E-29 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 2511 | 2679 | 1.9E-23 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 1007 | 1305 | 7.72E-29 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 456 | 695 | 6.61E-66 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1939 | 2158 | 8.85E-61 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 2265 | 2474 | 2.22E-23 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1322 | 1546 | 9.16E-56 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 2201 | 2269 | 1.73E-6 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 2485 | 2749 | 6.89E-47 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 133 | 445 | 3.66E-49 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 1636 | 1928 | 7.06E-43 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1930 | 2186 | 2.5E-73 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 2476 | 2759 | 9.0E-60 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 447 | 701 | 2.2E-80 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 110 | 445 | 3.8E-59 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1307 | 1565 | 1.3E-76 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 1599 | 1928 | 1.8E-51 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 2203 | 2474 | 5.4E-26 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 994 | 1306 | 1.4E-43 | IPR036640 |
| SMART | SM00382 | AAA_5 | 2519 | 2734 | 2.7E-9 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1351 | 1524 | 2.3E-10 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1973 | 2158 | 7.8E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 490 | 675 | 1.1E-13 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 2495 | 2757 | 15.793127 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 466 | 698 | 18.474184 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 1638 | 1910 | 28.703535 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1947 | 2190 | 16.826868 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1324 | 1547 | 22.755877 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 2266 | 2456 | 14.203458 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 147 | 427 | 33.038727 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 1010 | 1290 | 29.747404 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 1449 | 1463 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_018812876.2 | ABC transporter C family member 3-like [Juglans regia] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2H5P5L2 | ABC-type xenobiotic transporter (Fragment) OS=Citrus unshiu OX=55188 GN=CUMW_106090 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology