Basic Information
Locus ID:
Cgl01G1376
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
F-box family protein-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 24391234 | 24397060 | + | Cgl01G1376 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.67 | 44,732.19 Da | 47.80 | 89.82 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 23 | 56 | 3.1E-6 | IPR001810 |
| Pfam | PF08268 | F-box associated domain | 255 | 310 | 6.0E-5 | IPR013187 |
| SUPERFAMILY | SSF81383 | F-box domain | 23 | 77 | 4.32E-10 | IPR036047 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 87 | 352 | 8.24E-6 | IPR011043 |
| Gene3D | G3DSA:1.20.1280.50 | - | 21 | 59 | 2.4E-5 | - |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 137 | 337 | 4.5E-25 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G30790.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_042949883.1 | F-box protein At5g49610 [Carya illinoinensis] | 0 |
| Q9SY20 | F-box protein At1g30790 OS=Arabidopsis thaliana OX=3702 GN=At1g30790 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5N6RWA7 | F-box domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_020413 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg19076, jg21476 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G20620.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022358m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp3g08190.v2.2, Sp3g18620.v2.2, Sp3g18660.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g043170.2N, BniB01g043700.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1238 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G1376 |