Basic Information
Locus ID:
Cgl01G1220
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 22842547 | 22845910 | - | Cgl01G1220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.62 | 51,914.06 Da | 30.47 | 76.06 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 301 | 334 | 3.1E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 339 | 373 | 6.0E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 176 | 211 | 0.0025 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 173 | 464 | 3.97E-42 | IPR036322 |
| Gene3D | G3DSA:4.10.1000.10 | - | 23 | 78 | 1.7E-5 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 163 | 302 | 2.6E-14 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 303 | 469 | 6.5E-24 | IPR015943 |
| SMART | SM00320 | WD40_4 | 172 | 211 | 1.9E-4 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 29 | 52 | 0.0033 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 143 | 167 | 0.073 | IPR000571 |
| SMART | SM00320 | WD40_4 | 424 | 461 | 62.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 378 | 421 | 42.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 296 | 334 | 8.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 337 | 374 | 3.7E-5 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 179 | 211 | 9.731054 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 141 | 168 | 11.985751 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 303 | 343 | 11.377324 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 303 | 334 | 8.940149 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 179 | 211 | 11.64467 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 27 | 53 | 12.558486 | IPR000571 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 321 | 335 | 7.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 198 | 212 | 7.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 361 | 375 | 7.5E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_030965983.1 | zinc finger CCCH domain-containing protein 17-like [Quercus lobata] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7N2R3M9 | Zinc finger CCCH domain-containing protein 48-like OS=Quercus lobata OX=97700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology