Basic Information
Locus ID:
Cgl01G1150
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 21913796 | 21918632 | + | Cgl01G1150 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.82 | 46,326.22 Da | 32.26 | 74.83 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 320 | 354 | 5.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 282 | 315 | 5.6E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 204 | 364 | 4.88E-26 | IPR036322 |
| Gene3D | G3DSA:4.10.1000.10 | - | 31 | 88 | 1.8E-5 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 169 | 396 | 2.3E-25 | IPR015943 |
| SMART | SM00356 | c3hfinal6 | 39 | 62 | 0.0033 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 153 | 177 | 0.073 | IPR000571 |
| SMART | SM00320 | WD40_4 | 277 | 315 | 6.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 232 | 269 | 140.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 318 | 355 | 8.7E-5 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 151 | 178 | 11.985751 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 37 | 63 | 12.558486 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 284 | 315 | 9.071966 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 284 | 324 | 11.210233 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_030965983.1 | zinc finger CCCH domain-containing protein 17-like [Quercus lobata] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7N2R3M9 | Zinc finger CCCH domain-containing protein 48-like OS=Quercus lobata OX=97700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology