Basic Information
Locus ID:
Cgl01G1089
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
recombinational repair
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 21005251 | 21012849 | + | Cgl01G1089 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.36 | 35,018.65 Da | 34.34 | 95.92 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 191 | 304 | 2.0709E-39 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 129 | 159 | 2.4E-7 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 206 | 296 | 3.1E-5 | IPR001650 |
| SUPERFAMILY | SSF57850 | RING/U-box | 112 | 164 | 8.17E-10 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 81 | 318 | 3.45E-25 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 175 | 319 | 8.2E-36 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 119 | 174 | 2.0E-8 | IPR013083 |
| SMART | SM00184 | ring_2 | 129 | 167 | 2.9E-4 | IPR001841 |
| SMART | SM00490 | helicmild6 | 213 | 296 | 0.0057 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 177 | 319 | 8.542067 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 129 | 168 | 9.89275 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 144 | 153 | - | IPR017907 |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_040998893.1 | LOW QUALITY PROTEIN: helicase-like transcription factor CHR28 [Juglans microcarpa x Juglans regia] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T1N313 | Helicase-like transcription factor CHR28 OS=Carya illinoinensis OX=32201 GN=CIPAW_16G001400 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology