Basic Information
Locus ID:
Cgl01G0001
Species & Taxonomic ID:
Casuarina glauca & 3522
Genome Assembly:
GCA_028551395.1
Description:
C1 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 38436 | 44663 | - | Cgl01G0001 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.96 | 87,553.88 Da | 46.84 | 82.71 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03107 | C1 domain | 152 | 195 | 1.9E-6 | IPR004146 |
| Pfam | PF03107 | C1 domain | 211 | 254 | 6.9E-6 | IPR004146 |
| Pfam | PF03107 | C1 domain | 264 | 308 | 1.7E-6 | IPR004146 |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 57 | 144 | 7.57E-12 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 144 | 198 | 4.64E-9 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 246 | 307 | 2.09E-11 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 294 | 377 | 1.44E-12 | - |
| Coils | Coil | Coil | 690 | 717 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G27500.3 | - | 0 |
| RefSeq | XP_042939090.1 | uncharacterized protein LOC122274172 [Carya illinoinensis] | 0 |
| TrEMBL | A0A5N6R9Q9 | Phorbol-ester/DAG-type domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_013571 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 4 | AT2G21810.1, AT2G21830.1, AT2G21840.1, AT2G21850.1 |
| Brassicaceae | Eutrema salsugineum | 5 | Thhalv10000096m.g.v1.0, Thhalv10000100m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g01290.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB05g064140.2N, BniB05g064170.2N, BniB07g028200.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1160 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G0001 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-12109, nbisL1-mrna-5028, nbisL1-mrna-5029 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG17.926 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.1892 |
| Rhizophoraceae | Carallia pectinifolia | 6 | nbisL1-mrna-3275, nbisL1-mrna-3288, nbisL1-mrna-3294 ... |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-13823, nbisL1-mrna-5376 |
| Salicaceae | Populus euphratica | 5 | populus_peu08735, populus_peu19514, populus_peu19515 ... |