Basic Information
Locus ID:
Ceq09G2008
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr09 | 24386276 | 24397155 | - | Ceq09G2008 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 139,495.02 Da | 58.02 | 75.77 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 48 | 173 | 6.07527E-32 | - |
| CDD | cd12108 | Hr-like | 298 | 426 | 6.82513E-19 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1115 | 1158 | 6.06912E-17 | - |
| CDD | cd12108 | Hr-like | 647 | 803 | 4.75502E-27 | - |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 643 | 804 | 1.6E-7 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 51 | 175 | 1.8E-13 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 296 | 428 | 1.4E-5 | IPR012312 |
| Pfam | PF05495 | CHY zinc finger | 987 | 1062 | 7.8E-19 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 1163 | 1220 | 1.2E-23 | IPR039512 |
| Pfam | PF13639 | Ring finger domain | 1115 | 1157 | 1.1E-6 | IPR001841 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1053 | 1108 | 3.01E-14 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1113 | 1169 | 5.3E-7 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 982 | 1043 | 1.57E-13 | IPR037274 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 301 | 444 | 6.8E-20 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 1187 | 1228 | 5.8E-17 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 638 | 868 | 7.2E-26 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1109 | 1160 | 3.3E-9 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 44 | 193 | 2.1E-32 | - |
| SMART | SM00184 | ring_2 | 1116 | 1157 | 3.2E-5 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 980 | 1049 | 25.401417 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1116 | 1158 | 11.176261 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1052 | 1115 | 29.113712 | IPR017921 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 532 | 559 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 541 | 559 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_050240869.1 | zinc finger protein BRUTUS-like [Quercus robur] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A1V2S3 | Putative RING finger protein C2F3.16 OS=Morella rubra OX=262757 GN=CJ030_MR7G023690 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology