Basic Information
Locus ID:
Ceq09G1625
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr09 | 21092889 | 21096210 | + | Ceq09G1625 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.00 | 44,581.15 Da | 39.38 | 67.37 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 77 | 115 | 1.52776E-14 | - |
| Pfam | PF03145 | Seven in absentia protein family | 121 | 371 | 1.3E-75 | IPR018121 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 132 | 223 | 7.19E-23 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 244 | 375 | 3.79E-21 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 71 | 119 | 1.25E-5 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 243 | 371 | 1.2E-38 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 127 | 187 | 1.4E-17 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 73 | 121 | 5.2E-6 | IPR013083 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 132 | 192 | 14.125784 | IPR013010 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 79 | 115 | 9.464913 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 52 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27880.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_018842877.1 | E3 ubiquitin-protein ligase SINAT5-like [Juglans regia] | 0 |
| Q9STN8 | E3 ubiquitin-protein ligase SINAT4 OS=Arabidopsis thaliana OX=3702 GN=SINAT4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6RFJ0 | RING-type E3 ubiquitin transferase OS=Carpinus fangiana OX=176857 GN=FH972_016230 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology