Basic Information
Locus ID:
Ceq09G1401
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
Polygalacturonase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr09 | 19221921 | 19224893 | + | Ceq09G1401 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.04 | 50,706.74 Da | 51.21 | 78.79 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 111 | 423 | 5.5E-83 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 74 | 456 | 1.89E-124 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 65 | 454 | 6.4E-117 | IPR012334 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 294 | 307 | - | IPR000743 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 44 | 63 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 69 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48100.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_018825778.2 | polygalacturonase At1g48100-like [Juglans regia] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6RDV4 | Polygalacturonase At1g80170 OS=Carpinus fangiana OX=176857 GN=FH972_015700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology