Basic Information
Locus ID:
Ceq09G1400
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr09 | 19169238 | 19215501 | - | Ceq09G1400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.12 | 472,678.41 Da | 43.11 | 90.40 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 2648 | 2763 | 5.35406E-7 | - |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2254 | 2394 | 6.3E-11 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1999 | 2170 | 1.0E-12 | IPR009291 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 139 | 381 | 7.8E-68 | IPR031646 |
| Pfam | PF00168 | C2 domain | 2646 | 2754 | 1.9E-4 | IPR000008 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 115 | 2.1E-30 | IPR026854 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3239 | 3534 | 3.9E-12 | IPR009543 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 569 | 797 | 2.4E-35 | IPR031642 |
| SUPERFAMILY | SSF50729 | PH domain-like | 839 | 937 | 3.03E-6 | - |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 2627 | 2753 | 2.18E-6 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 2632 | 2773 | 1.3E-6 | IPR035892 |
| SMART | SM00694 | dysfc | 2950 | 2990 | 0.0017 | IPR006614 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 2623 | 2769 | 9.114981 | IPR000008 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 4197 | 4234 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2207 | 2233 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2210 | 2224 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 4208 | 4234 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48090.4 | - | 0 |
| RefSeq | XP_042990422.1 | uncharacterized protein LOC122317403 [Carya illinoinensis] | 0 |
| G0S3B8 | Intermembrane lipid transfer protein VPS13 OS=Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719) OX=759272 GN=VPS13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T1RNQ2 | C2 domain-containing protein OS=Carya illinoinensis OX=32201 GN=CIPAW_01G132700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology