Basic Information
Locus ID:
Ceq09G1265
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
F-box LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr09 | 18013559 | 18026968 | - | Ceq09G1265 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.18 | 128,014.74 Da | 45.34 | 93.99 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09256 | AP_MuD_MHD | 852 | 1168 | 7.15031E-114 | - |
| Pfam | PF13516 | Leucine Rich repeat | 158 | 179 | 0.046 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 184 | 207 | 0.43 | IPR001611 |
| Pfam | PF00928 | Adaptor complexes medium subunit family | 853 | 1138 | 7.7E-33 | IPR028565 |
| Pfam | PF13516 | Leucine Rich repeat | 313 | 336 | 0.71 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 442 | 465 | 0.083 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 391 | 411 | 0.44 | IPR001611 |
| Pfam | PF12937 | F-box-like | 11 | 41 | 3.5E-7 | IPR001810 |
| Pfam | PF13516 | Leucine Rich repeat | 469 | 491 | 0.0014 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 119 | 357 | 1.57E-33 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 273 | 503 | 6.28E-40 | - |
| SUPERFAMILY | SSF49447 | Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor | 852 | 1161 | 3.66E-34 | IPR036168 |
| SUPERFAMILY | SSF81383 | F-box domain | 10 | 42 | 7.33E-8 | IPR036047 |
| Gene3D | G3DSA:2.60.40.1170 | Mu homology domain, subdomain B | 853 | 983 | 4.1E-16 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 429 | 511 | 9.3E-15 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 6 | 247 | 4.5E-36 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 248 | 428 | 6.1E-35 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 339 | 364 | 0.068 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 237 | 261 | 42.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 469 | 493 | 0.19 | IPR006553 |
| SMART | SM00256 | fbox_2 | 11 | 52 | 3.2E-4 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 184 | 209 | 5.1E-5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 287 | 312 | 1.5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 262 | 286 | 25.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 313 | 338 | 1.4E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 211 | 236 | 2.7 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 365 | 390 | 0.012 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 133 | 158 | 0.14 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 159 | 183 | 0.12 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 443 | 468 | 1.6E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 391 | 416 | 19.0 | IPR006553 |
| ProSiteProfiles | PS51072 | Mu homology domain (MHD) profile. | 862 | 1123 | 16.876413 | IPR028565 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G20790.1 | clathrin adaptor complexes medium subunit family protein. | 0 |
| RefSeq | XP_042939381.1 | AP-5 complex subunit mu isoform X1 [Carya illinoinensis] | 0 |
| Q8W0Z6 | AP-5 complex subunit mu OS=Arabidopsis thaliana OX=3702 GN=AP5M PE=2 SV=1 | 0 | |
| TrEMBL | A0A1Q3B5S2 | Adap_comp_sub domain-containing protein/F-box-like domain-containing protein/LRR_6 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_06866 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg12492 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10811 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014763 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g198430 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25166, Sbi_jg9009 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19582 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007635 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl42443, Sgl47172 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000008827, gene:ENSEOMG00000010996 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0018380, CQ.Regalona.r1.8BG0023990 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30238010, pistato.v30238020 |
| Apiaceae | Apium graveolens | 1 | Ag1G01921 |
| Arecaceae | Cocos nucifera | 1 | COCNU_12G004270 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103709908 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.3227.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G04359 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G20790.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003762m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g27240.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g008200.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1265 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1353 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g05560 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g17010 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.1412 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00026245 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G00113 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.3627, BH05.3648, CH05.3827 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0392480, gene-QOZ80_5BG0440810 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0447110.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_017812 |
| Poaceae | Oryza coarctata | 1 | Oco24G007200 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g34370.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G084500 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0703697, Pt_Chr0703700 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr04G016200, Chr06G016900, Chr19G009910, Chr27G006520 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G191000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG014460, gene_TRIDC5BG017260 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G099300.2, TraesCS5B02G104600.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb410820_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-30225 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g25907 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2715, evm.TU.LG23.926 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g12070 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.671 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-16011 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4120 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-563 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.405 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007513 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15369 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3411 |
| Salicaceae | Populus euphratica | 1 | populus_peu22014 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645027 |
| Solanaceae | Solanum chilense | 1 | SOLCI003038500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008293 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9381 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1504 |
| Zosteraceae | Zostera marina | 1 | Zosma02g24600.v3.1 |