Basic Information
Locus ID:
Ceq09G1088
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
26S proteasome non-ATPase regulatory subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr09 | 16452613 | 16474917 | + | Ceq09G1088 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 104,691.77 Da | 33.92 | 88.27 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07816 | Bet_v1-like | 170 | 300 | 3.12258E-46 | - |
| CDD | cd08069 | MPN_RPN11_CSN5 | 504 | 770 | 2.49535E-150 | - |
| CDD | cd07816 | Bet_v1-like | 321 | 463 | 3.68649E-56 | - |
| CDD | cd07816 | Bet_v1-like | 16 | 157 | 1.0774E-51 | - |
| CDD | cd07816 | Bet_v1-like | 796 | 944 | 2.28753E-52 | - |
| Pfam | PF13012 | Maintenance of mitochondrial structure and function | 657 | 778 | 7.0E-14 | IPR024969 |
| Pfam | PF00407 | Pathogenesis-related protein Bet v 1 family | 21 | 158 | 1.3E-19 | IPR000916 |
| Pfam | PF00407 | Pathogenesis-related protein Bet v 1 family | 317 | 444 | 1.9E-22 | IPR000916 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 511 | 622 | 1.6E-31 | IPR000555 |
| Pfam | PF00407 | Pathogenesis-related protein Bet v 1 family | 167 | 296 | 5.6E-17 | IPR000916 |
| Pfam | PF00407 | Pathogenesis-related protein Bet v 1 family | 793 | 947 | 4.8E-21 | IPR000916 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 515 | 652 | 1.44E-18 | - |
| SUPERFAMILY | SSF55961 | Bet v1-like | 796 | 951 | 2.08E-44 | - |
| SUPERFAMILY | SSF55961 | Bet v1-like | 318 | 463 | 2.83E-37 | - |
| SUPERFAMILY | SSF55961 | Bet v1-like | 168 | 299 | 1.4E-33 | - |
| SUPERFAMILY | SSF55961 | Bet v1-like | 15 | 159 | 1.52E-35 | - |
| Gene3D | G3DSA:3.30.530.20 | - | 10 | 162 | 4.9E-53 | IPR023393 |
| Gene3D | G3DSA:3.30.530.20 | - | 318 | 465 | 8.9E-56 | IPR023393 |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 498 | 717 | 6.0E-80 | - |
| Gene3D | G3DSA:3.30.530.20 | - | 168 | 310 | 1.2E-48 | IPR023393 |
| Gene3D | G3DSA:3.30.530.20 | - | 787 | 952 | 1.3E-60 | IPR023393 |
| SMART | SM01037 | Bet_v_1_2 | 317 | 463 | 0.0097 | IPR000916 |
| SMART | SM00232 | pad1_6 | 514 | 649 | 1.1E-48 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 515 | 650 | 36.302238 | IPR037518 |
| ProSitePatterns | PS00451 | Pathogenesis-related proteins Bet v I family signature. | 405 | 437 | - | IPR024949 |
| ProSitePatterns | PS00451 | Pathogenesis-related proteins Bet v I family signature. | 255 | 287 | - | IPR024949 |
| PRINTS | PR00634 | Major pollen allergen Bet V1 signature | 382 | 401 | 1.0E-45 | IPR024949 |
| PRINTS | PR00634 | Major pollen allergen Bet V1 signature | 366 | 375 | 1.0E-45 | IPR024949 |
| PRINTS | PR00634 | Major pollen allergen Bet V1 signature | 319 | 339 | 1.0E-45 | IPR024949 |
| PRINTS | PR00634 | Major pollen allergen Bet V1 signature | 401 | 414 | 1.0E-45 | IPR024949 |
| PRINTS | PR00634 | Major pollen allergen Bet V1 signature | 342 | 352 | 1.0E-45 | IPR024949 |
| PRINTS | PR00634 | Major pollen allergen Bet V1 signature | 426 | 442 | 1.0E-45 | IPR024949 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G23540.1 | Mov34/MPN/PAD-1 family protein. | 0 |
| RefSeq | XP_006434811.1 | 26S proteasome non-ATPase regulatory subunit 14 homolog [Citrus clementina] | 0 |
| Q9LT08 | 26S proteasome non-ATPase regulatory subunit 14 homolog OS=Arabidopsis thaliana OX=3702 GN=RPN11 PE=1 SV=1 | 0 | |
| TrEMBL | V4TED8 | MPN domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10001908mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg11957, jg22788 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14001 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah016369 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg24873, Sbi_jg32558, Sbi_jg8732 |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg10824, Seu_jg19867, Seu_jg7452 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015584 |
| Amaranthaceae | Suaeda glauca | 8 | Sgl03874, Sgl04959, Sgl10010, Sgl44899, Sgl45062, Sgl49662 ... |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000010997, gene:ENSEOMG00000030544 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4AG0016260 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30044310, pistato.v30045520 |
| Apiaceae | Apium graveolens | 2 | Ag10G02241, Ag4G02789 |
| Arecaceae | Cocos nucifera | 3 | COCNU_04G001160, COCNU_04G015880, COCNU_16G008540 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103704111, gene-LOC103722542, gene-LOC103722649 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.276.V1.1, AsparagusV1_07.108.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri18G27343, Ftri1G10890, Ftri9G14897 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G23540.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10004651m.g.v1.0, Thhalv10008281m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g23650.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g076710.2N, BniB04g003230.2N, BniB07g040660.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1088 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1181 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g02700 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1103s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g12710 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1276 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG06.459, evm.TU.LG06.460 |
| Plantaginaceae | Plantago ovata | 4 | Pov_00002369, Pov_00013026, Pov_00027653, Pov_00036626 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G20865 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.898, AH05.2430, BH02.1231, BH05.2526, CH02.1357 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0004450, gene-QOZ80_1AG0032370 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.1HG0059930.1, HORVU.MOREX.r3.3HG0255730.1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_013876, gene-QYE76_018299, gene-QYE76_052340 |
| Poaceae | Oryza coarctata | 6 | Oco01G007420, Oco02G007700, Oco09G007920, Oco10G008170 ... |
| Poaceae | Oryza sativa | 4 | LOC_Os01g16190.1, LOC_Os05g30800.1, LOC_Os06g49020.1 ... |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G113100, gene-BS78_09G146300 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0401114, Pt_Chr0505271, Pt_Chr0505320 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr03G001480, Chr08G003620, Chr18G009440, Chr20G008800 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G390400, Tel3E01G318600, Tel7E01G699400 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC1AG035720, gene_TRIDC3AG025520 ... |
| Poaceae | Triticum aestivum | 8 | TraesCS1A02G237100.2, TraesCS1D02G235300.1 ... |
| Poaceae | Zea mays | 5 | Zm00001eb128130_P001, Zm00001eb197860_P001 ... |
| Poaceae | Zoysia japonica | 4 | nbis-gene-13942, nbis-gene-24517, nbis-gene-44771 ... |
| Poaceae | Zoysia macrostachya | 3 | Zma_g22753, Zma_g27195, Zma_g9691 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.2783, evm.TU.LG02.212, evm.TU.LG09.1453 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g00490, gene.Posoc04g04950 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.936 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-8855 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8922 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20648 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.292 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003759 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11434 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-17156, nbisL1-mrna-25098 |
| Salicaceae | Populus euphratica | 1 | populus_peu31966 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627884 |
| Solanaceae | Solanum chilense | 1 | SOLCI002880700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107018080 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_7350 |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G2943, TC10G2164 |
| Zosteraceae | Zostera marina | 1 | Zosma06g07270.v3.1 |