Basic Information
Locus ID:
Ceq09G0893
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
Sec12-like protein 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr09 | 14249668 | 14256873 | - | Ceq09G0893 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 42,477.38 Da | 33.82 | 81.37 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 172 | 244 | 1.2E-4 | IPR024977 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 53 | 356 | 8.63E-39 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 51 | 364 | 3.8E-68 | IPR015943 |
| SMART | SM00320 | WD40_4 | 317 | 358 | 0.52 | IPR001680 |
| SMART | SM00320 | WD40_4 | 89 | 129 | 100.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 144 | 182 | 0.26 | IPR001680 |
| SMART | SM00320 | WD40_4 | 186 | 224 | 0.0041 | IPR001680 |
| SMART | SM00320 | WD40_4 | 276 | 315 | 2.2 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 192 | 233 | 10.976305 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 41 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 50 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01470.1 | SEC12P-like 2 protein. Sec12p-like protein (GTP exchange protein) that functionally complements yeast sec12 null mutant. Protein is localized to the ER. | 0 |
| RefSeq | XP_041012417.1 | SEC12-like protein 2 [Juglans microcarpa x Juglans regia] | 0 |
| Q39221 | SEC12-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=STL2P PE=1 SV=4 | 0 | |
| TrEMBL | A0A5B9G3S1 | Prolactin regulatory element-binding protein OS=Betula platyphylla OX=78630 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology