Basic Information
Locus ID:
Ceq09G0783
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr09 | 12178641 | 12185146 | - | Ceq09G0783 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 52,334.27 Da | 34.33 | 78.61 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 206 | 266 | 6.7E-7 | IPR000504 |
| Pfam | PF10258 | PHAX RNA-binding domain | 1 | 35 | 1.3E-6 | IPR019385 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 189 | 281 | 7.33E-13 | IPR035979 |
| Gene3D | G3DSA:1.10.10.1440 | - | 1 | 45 | 3.7E-10 | IPR038092 |
| Gene3D | G3DSA:3.30.70.330 | - | 198 | 272 | 3.1E-9 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 204 | 273 | 1.8E-6 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 203 | 277 | 11.844008 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 461 | 483 | - | - |
| Coils | Coil | Coil | 418 | 438 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_023918416.1 | binding partner of ACD11 1-like isoform X3 [Quercus suber] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2N9E1A9 | RRM domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS468 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology