Basic Information
Locus ID:
Ceq09G0770
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr09 | 11973994 | 11988015 | + | Ceq09G0770 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.41 | 245,403.91 Da | 39.23 | 80.93 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00590 | RRM_SF | 1027 | 1096 | 1.42589E-7 | - |
| Pfam | PF05183 | RNA dependent RNA polymerase | 285 | 862 | 8.0E-188 | IPR007855 |
| Pfam | PF05183 | RNA dependent RNA polymerase | 1393 | 1969 | 1.4E-189 | IPR007855 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 1022 | 1100 | 4.76E-8 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 1014 | 1101 | 1.8E-5 | IPR012677 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 1025 | 1111 | 8.876369 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G14790.1 | RNA-dependent RNA polymerase 1. Encodes RNA-dependent RNA polymerase. While not required for virus-induced post-transcriptional gene silencing (PTGS), it can promote turnover of viral RNAs in infected plants. Nomenclature according to Xie, et al. (2004). Involved in the production of Cucumber Mosaic Virus siRNAs. | 0 |
| RefSeq | XP_018856654.1 | RNA-dependent RNA polymerase 1 [Juglans regia] | 0 |
| Q9LQV2 | RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7J6HPI5 | Aspartate-semialdehyde dehydrogenase OS=Cannabis sativa OX=3483 GN=G4B88_009028 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology