Basic Information
Locus ID:
Ceq09G0389
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
ATP-dependent DNA helicase Q-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr09 | 5612854 | 5626151 | + | Ceq09G0389 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.83 | 141,970.77 Da | 45.32 | 80.09 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 497 | 699 | 7.46588E-102 | - |
| CDD | cd18794 | SF2_C_RecQ | 700 | 832 | 4.83938E-74 | - |
| Pfam | PF16124 | RecQ zinc-binding | 834 | 916 | 8.9E-17 | IPR032284 |
| Pfam | PF00570 | HRDC domain | 1079 | 1146 | 3.8E-15 | IPR002121 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 716 | 822 | 5.8E-17 | IPR001650 |
| Pfam | PF09382 | RQC domain | 922 | 1039 | 2.6E-22 | IPR018982 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 511 | 679 | 2.7E-17 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 698 | 966 | 2.86E-58 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 1077 | 1150 | 1.24E-13 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 461 | 841 | 4.99E-42 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 919 | 1038 | 1.8E-19 | IPR036388 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 1071 | 1157 | 1.6E-23 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 700 | 918 | 4.5E-66 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 472 | 699 | 4.2E-90 | IPR027417 |
| SMART | SM00956 | RQC_2 | 925 | 1036 | 4.2E-30 | IPR018982 |
| SMART | SM00341 | hrdc7 | 1074 | 1156 | 7.6E-5 | IPR002121 |
| SMART | SM00490 | helicmild6 | 742 | 823 | 2.0E-27 | IPR001650 |
| SMART | SM00487 | ultradead3 | 505 | 708 | 3.0E-30 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 501 | 976 | 3.0E-163 | IPR004589 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 1074 | 1156 | 18.357246 | IPR002121 |
| ProSiteProfiles | PS50206 | Rhodanese domain profile. | 732 | 774 | 8.877661 | IPR001763 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 717 | 860 | 19.417076 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 517 | 692 | 22.0779 | IPR014001 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 631 | 640 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1157 | 1192 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 385 | 404 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 170 | 191 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 170 | 197 | - | - |
| Coils | Coil | Coil | 365 | 385 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_042982000.1 | ATP-dependent DNA helicase Q-like 4A [Carya illinoinensis] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 | |
| TrEMBL | A0A8J4R7K8 | DNA helicase OS=Castanea mollissima OX=60419 GN=CMV_016094 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology