Basic Information
Locus ID:
Ceq08G2458
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 26996497 | 27003906 | - | Ceq08G2458 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.64 | 49,990.91 Da | 56.67 | 68.19 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 3 | 142 | 4.84703E-72 | IPR000608 |
| CDD | cd00018 | AP2 | 294 | 354 | 2.61728E-33 | IPR001471 |
| Pfam | PF00847 | AP2 domain | 295 | 344 | 8.3E-15 | IPR001471 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 5 | 141 | 2.0E-52 | IPR000608 |
| SUPERFAMILY | SSF54171 | DNA-binding domain | 295 | 353 | 1.11E-21 | IPR016177 |
| SUPERFAMILY | SSF54495 | UBC-like | 2 | 145 | 2.75E-63 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 144 | 9.7E-72 | IPR016135 |
| Gene3D | G3DSA:3.30.730.10 | AP2/ERF domain | 294 | 354 | 2.1E-28 | IPR036955 |
| SMART | SM00380 | rav1_2 | 295 | 358 | 5.6E-39 | IPR001471 |
| SMART | SM00212 | ubc_7 | 4 | 147 | 1.3E-76 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 147 | 58.890457 | IPR000608 |
| ProSiteProfiles | PS51032 | AP2/ERF domain profile. | 295 | 352 | 24.262825 | IPR001471 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 74 | 89 | - | IPR023313 |
| PRINTS | PR00367 | Ethylene responsive element binding protein signature | 296 | 307 | 5.2E-10 | IPR001471 |
| PRINTS | PR00367 | Ethylene responsive element binding protein signature | 318 | 334 | 5.2E-10 | IPR001471 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 258 | 299 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 273 | 296 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
ko04013 (MAPK signaling pathway - fly)
map04013 (MAPK signaling pathway - fly)
ko04120 (Ubiquitin mediated proteolysis)
map04120 (Ubiquitin mediated proteolysis)
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04624 (Toll and Imd signaling pathway)
map04624 (Toll and Imd signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G64230.1 | ubiquitin-conjugating enzyme 28. | 0 |
| RefSeq | XP_016194861.1 | ubiquitin-conjugating enzyme E2-17 kDa [Arachis ipaensis] | 0 |
| P35135 | Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum OX=4081 PE=2 SV=1 | 0 | |
| TrEMBL | A0A4S4E318 | AP2/ERF domain-containing protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_010542 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology