Basic Information
Locus ID:
Ceq08G1752
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 19897143 | 19901950 | - | Ceq08G1752 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.26 | 57,871.05 Da | 43.97 | 77.74 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 384 | 418 | 0.05 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 344 | 379 | 1.9E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 222 | 257 | 3.8E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 218 | 509 | 2.23E-43 | IPR036322 |
| Gene3D | G3DSA:3.30.1370.210 | - | 33 | 80 | 1.8E-5 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 213 | 341 | 4.0E-15 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 342 | 518 | 7.5E-26 | IPR015943 |
| SMART | SM00320 | WD40_4 | 297 | 334 | 47.0 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 52 | 76 | 1.6E-4 | IPR000571 |
| SMART | SM00320 | WD40_4 | 218 | 257 | 1.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 342 | 379 | 6.6E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 469 | 508 | 9.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 382 | 419 | 9.9E-4 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 349 | 379 | 9.520146 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 51 | 77 | 13.891738 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 349 | 388 | 12.17936 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 225 | 257 | 10.759232 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 389 | 428 | 8.570195 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 225 | 257 | 12.947979 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 406 | 420 | 7.9E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 366 | 380 | 7.9E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 244 | 258 | 7.9E-7 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G49200.1 | WD-40 repeat family protein / zfwd4 protein (ZFWD4). | 0 |
| RefSeq | XP_050280479.1 | zinc finger CCCH domain-containing protein 48-like [Quercus robur] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5N6RFC4 | WD_REPEATS_REGION domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_015225 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology