Basic Information
Locus ID:
Ceq08G1643
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 18381425 | 18386701 | + | Ceq08G1643 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.45 | 57,318.14 Da | 52.32 | 74.29 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 345 | 380 | 1.9E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 385 | 419 | 0.0028 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 223 | 258 | 7.0E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 220 | 500 | 1.1E-41 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 209 | 499 | 1.7E-43 | IPR015943 |
| SMART | SM00320 | WD40_4 | 298 | 335 | 12.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 343 | 380 | 6.6E-7 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 24 | 48 | 0.0019 | IPR000571 |
| SMART | SM00320 | WD40_4 | 383 | 420 | 3.3E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 219 | 258 | 6.4E-6 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 23 | 49 | 12.849548 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 350 | 389 | 12.17936 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 226 | 258 | 10.653776 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 390 | 429 | 9.271977 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 226 | 267 | 13.649761 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 350 | 380 | 9.520146 | - |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 367 | 381 | 1.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 245 | 259 | 1.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 407 | 421 | 1.3E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 162 | 209 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G49200.1 | WD-40 repeat family protein / zfwd4 protein (ZFWD4). | 0 |
| RefSeq | XP_030967662.1 | zinc finger CCCH domain-containing protein 17-like [Quercus lobata] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5N6RFC4 | WD_REPEATS_REGION domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_015225 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology