Basic Information
Locus ID:
Ceq08G1639
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 18323119 | 18337902 | - | Ceq08G1639 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.06 | 62,941.37 Da | 43.26 | 78.12 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 316 | 351 | 3.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 194 | 229 | 4.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 355 | 390 | 0.0028 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 191 | 480 | 1.03E-41 | IPR036322 |
| SUPERFAMILY | SSF55811 | Nudix | 484 | 561 | 8.26E-8 | IPR015797 |
| Gene3D | G3DSA:3.90.79.10 | Nucleoside Triphosphate Pyrophosphohydrolase | 486 | 562 | 1.6E-9 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 186 | 335 | 1.6E-19 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 336 | 485 | 7.4E-20 | IPR015943 |
| SMART | SM00320 | WD40_4 | 314 | 351 | 1.3E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 269 | 306 | 31.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 401 | 442 | 150.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 190 | 229 | 1.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 354 | 391 | 3.6E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 197 | 238 | 13.582925 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 23 | 49 | 12.351926 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 321 | 351 | 9.862871 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 197 | 229 | 10.759232 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 361 | 400 | 9.138305 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 321 | 360 | 12.413288 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 378 | 392 | 1.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 216 | 230 | 1.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 338 | 352 | 1.1E-6 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40880.2 | - | 0 |
| RefSeq | XP_030967662.1 | zinc finger CCCH domain-containing protein 17-like [Quercus lobata] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5N6RFC4 | WD_REPEATS_REGION domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_015225 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology