Basic Information
Locus ID:
Ceq08G1617
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 18047216 | 18052486 | - | Ceq08G1617 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.89 | 57,013.16 Da | 49.48 | 76.31 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 333 | 368 | 3.0E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 209 | 246 | 1.6E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 373 | 407 | 0.0024 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 214 | 504 | 5.16E-39 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 263 | 509 | 1.0E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 185 | 259 | 4.7E-8 | IPR015943 |
| SMART | SM00320 | WD40_4 | 201 | 246 | 6.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 456 | 501 | 41.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 331 | 368 | 6.3E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 286 | 323 | 6.9 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 24 | 48 | 0.0019 | IPR000571 |
| SMART | SM00320 | WD40_4 | 371 | 408 | 1.6E-5 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 23 | 49 | 12.849548 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 338 | 368 | 9.520146 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 214 | 255 | 10.374778 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 338 | 377 | 12.17936 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 378 | 417 | 9.171722 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 233 | 247 | 1.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 395 | 409 | 1.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 355 | 369 | 1.5E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 132 | 180 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_030967662.1 | zinc finger CCCH domain-containing protein 17-like [Quercus lobata] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5N6RFC4 | WD_REPEATS_REGION domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_015225 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology