Basic Information
Locus ID:
Ceq08G1499
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 16203298 | 16208293 | - | Ceq08G1499 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 60,628.06 Da | 44.08 | 77.68 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 413 | 447 | 1.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 373 | 408 | 4.5E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 250 | 286 | 3.1E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 248 | 539 | 2.01E-44 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 311 | 546 | 3.7E-33 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 231 | 307 | 3.9E-11 | IPR015943 |
| SMART | SM00320 | WD40_4 | 247 | 286 | 2.2E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 450 | 494 | 16.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 326 | 363 | 27.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 497 | 536 | 13.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 411 | 448 | 1.7E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 371 | 408 | 3.2E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 418 | 457 | 9.271977 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 23 | 49 | 11.628965 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 254 | 286 | 12.077406 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 254 | 295 | 15.487762 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 378 | 417 | 10.742378 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 273 | 287 | 6.2E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 395 | 409 | 6.2E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 435 | 449 | 6.2E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 241 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_023896327.1 | zinc finger CCCH domain-containing protein 48-like [Quercus suber] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5N6RFC4 | WD_REPEATS_REGION domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_015225 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology