Basic Information
Locus ID:
Ceq08G1387
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 13775533 | 13778974 | - | Ceq08G1387 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.37 | 32,198.76 Da | 48.28 | 62.70 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14634 | zinc-RING finger domain | 147 | 192 | 1.5E-6 | IPR001841 |
| Pfam | PF14599 | Zinc-ribbon | 195 | 263 | 2.9E-21 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 32 | 112 | 6.7E-19 | IPR008913 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 27 | 103 | 1.44E-16 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 145 | 198 | 1.96E-9 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 82 | 141 | 2.09E-6 | IPR037275 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 134 | 212 | 4.2E-11 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 229 | 273 | 1.1E-18 | - |
| SMART | SM00184 | ring_2 | 148 | 190 | 1.1E-6 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 78 | 147 | 18.079494 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 25 | 101 | 24.729801 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 148 | 191 | 11.928664 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22920.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_021824085.1 | E3 ubiquitin-protein ligase RZFP34 [Prunus avium] | 0 |
| Q9FFB6 | E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6RJI4 | E3 ubiquitin-protein ligase MIEL1-like OS=Carpinus fangiana OX=176857 GN=FH972_017649 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology