Basic Information
Locus ID:
Ceq08G1313
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 12576927 | 12582352 | - | Ceq08G1313 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.96 | 51,295.24 Da | 67.65 | 77.03 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 262 | 310 | 9.28448E-16 | - |
| Pfam | PF12906 | RING-variant domain | 262 | 309 | 1.2E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 258 | 313 | 3.89E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 256 | 314 | 8.2E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 261 | 310 | 1.2E-17 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 254 | 316 | 19.663385 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 46 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 159 | 212 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 408 | 431 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 159 | 183 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 408 | 440 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_041023128.1 | uncharacterized protein LOC121264124 [Juglans microcarpa x Juglans regia] | 0 |
| TrEMBL | A0A6A1WJM5 | RING-CH-type domain-containing protein OS=Morella rubra OX=262757 GN=CJ030_MR2G000508 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology