Basic Information
Locus ID:
Ceq08G1279
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Short Name:
UPL4
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 12288149 | 12301058 | + | Ceq08G1279 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 266,148.97 Da | 52.26 | 87.65 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1141 | 1515 | 8.37646E-103 | IPR000569 |
| Pfam | PF01535 | PPR repeat | 2162 | 2191 | 1.8E-4 | IPR002885 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1188 | 1515 | 4.2E-70 | IPR000569 |
| Pfam | PF13041 | PPR repeat family | 2089 | 2136 | 2.6E-12 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 1858 | 1906 | 1.5E-11 | IPR002885 |
| Pfam | PF12854 | PPR repeat | 2052 | 2082 | 6.3E-6 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 2019 | 2045 | 0.03 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 2196 | 2241 | 2.2E-10 | IPR002885 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1136 | 1515 | 1.57E-83 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 5 | 524 | 1.27E-30 | IPR016024 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1083 | 1308 | 4.5E-37 | - |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1420 | 1528 | 1.3E-24 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 2008 | 2119 | 4.3E-24 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 2120 | 2362 | 7.9E-41 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 1853 | 2005 | 5.1E-24 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 1704 | 1852 | 8.6E-6 | IPR011990 |
| Gene3D | G3DSA:1.25.10.10 | - | 95 | 529 | 1.9E-43 | IPR011989 |
| SMART | SM00119 | hect_3 | 1153 | 1541 | 3.0E-78 | IPR000569 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 2019 | 2046 | 5.6E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 2198 | 2232 | 3.2E-9 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 2162 | 2191 | 2.2E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 2127 | 2160 | 1.0E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 2056 | 2082 | 3.1E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 1862 | 1895 | 6.5E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 2091 | 2126 | 5.8E-7 | IPR002885 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1155 | 1515 | 55.250298 | IPR000569 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 2160 | 2194 | 9.63504 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 2054 | 2088 | 10.05157 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 1894 | 1928 | 9.163705 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 2089 | 2124 | 10.325603 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 2016 | 2050 | 9.350046 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 2196 | 2230 | 14.10725 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 1859 | 1893 | 11.4875 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 2125 | 2159 | 11.158661 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 83 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1116 | 1133 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 860 | 887 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 7 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 45 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 816 | 846 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 812 | 846 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1116 | 1136 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1672 | 1697 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 83 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1968 | 1987 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.2 | - | 0 |
| RefSeq | XP_050242873.1 | E3 ubiquitin-protein ligase UPL4 isoform X2 [Quercus robur] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A1R3HQM0 | Protein unc-45 homolog B OS=Corchorus capsularis OX=210143 GN=CCACVL1_17703 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg14930 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14177 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah030219 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg27582, Sbi_jg32939 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg7719 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012164 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl71543, Sgl75119 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004487, gene:ENSEOMG00000035057 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0017710, CQ.Regalona.r1.7BG0019230 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30271930 |
| Apiaceae | Apium graveolens | 1 | Ag4G01600 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G002890 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103702861 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.228.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G29753 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G09650.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020113m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g07980.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g055220.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1279 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1307 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g15790 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0779s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g33050 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1379 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00006352 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G08536 |
| Poaceae | Echinochloa crus-galli | 2 | CH01.3982, CH02.3616 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_9BG0695360 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0466520.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_003812 |
| Poaceae | Oryza coarctata | 1 | Oco01G021030 |
| Poaceae | Oryza sativa | 2 | LOC_Os11g01210.1, LOC_Os12g01210.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G241400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0103646, Pt_Chr0705186 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr07G022510 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G268900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG025900, gene_TRIDC5BG027020 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G155800.1, TraesCS5B02G154011.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb156000_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-40101, nbis-gene-54547 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g17516, Zma_g25436 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG16.1116, evm.TU.LG20.1439 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g36010 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.841 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4358 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-18783 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9957 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000009l.326 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-21859 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5890 |
| Salicaceae | Populus euphratica | 1 | populus_peu25797 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132630102 |
| Solanaceae | Solanum chilense | 1 | SOLCI000383600 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107031406, gene-LOC107031500 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6768 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G0644 |
| Zosteraceae | Zostera marina | 1 | Zosma01g18650.v3.1 |