Basic Information
Locus ID:
Ceq08G1195
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 11354444 | 11362998 | + | Ceq08G1195 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.43 | 95,014.93 Da | 37.46 | 78.65 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15539 | PHD1_AIRE | 495 | 535 | 5.5695E-16 | - |
| Pfam | PF16135 | Tify domain binding domain | 429 | 478 | 7.9E-16 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 244 | 282 | 6.3E-9 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 491 | 542 | 1.05E-14 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 573 | 628 | 3.91E-6 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 725 | 820 | 2.51E-9 | IPR016181 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 484 | 550 | 1.3E-16 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 573 | 633 | 7.6E-10 | IPR013083 |
| Gene3D | G3DSA:3.40.630.30 | - | 672 | 840 | 2.9E-8 | - |
| SMART | SM00249 | PHD_3 | 495 | 536 | 1.3E-10 | IPR001965 |
| SMART | SM00249 | PHD_3 | 574 | 631 | 8.5E-4 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 572 | 633 | 8.519899 | IPR019787 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 493 | 538 | 10.228701 | IPR019787 |
| ProSiteProfiles | PS51186 | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 683 | 833 | 9.388456 | IPR000182 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 496 | 535 | - | IPR019786 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 575 | 630 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 44 | 130 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 130 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37520.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_042941753.1 | uncharacterized protein LOC122276242 isoform X2 [Carya illinoinensis] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6RK84 | Increased DNA methylation 1 OS=Carpinus fangiana OX=176857 GN=FH972_017425 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology