Basic Information
Locus ID:
Ceq08G1173
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 11167138 | 11171988 | + | Ceq08G1173 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.11 | 70,628.12 Da | 44.56 | 98.61 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 262 | 304 | 2.13667E-27 | - |
| Pfam | PF04564 | U-box domain | 259 | 327 | 9.8E-18 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 470 | 505 | 8.0E-6 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 550 | 588 | 8.5E-5 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 386 | 423 | 2.4E-4 | IPR000225 |
| SUPERFAMILY | SSF48371 | ARM repeat | 355 | 636 | 1.04E-46 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 258 | 331 | 1.34E-27 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 496 | 638 | 1.2E-18 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 258 | 331 | 4.2E-29 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 340 | 492 | 1.9E-32 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 7 | 119 | 1.1E-9 | IPR036537 |
| SMART | SM00185 | arm_5 | 549 | 589 | 10.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 507 | 548 | 360.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 466 | 506 | 7.5 | IPR000225 |
| SMART | SM00185 | arm_5 | 384 | 424 | 0.0094 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 261 | 324 | 1.2E-31 | IPR003613 |
| SMART | SM00185 | arm_5 | 425 | 465 | 59.0 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 257 | 331 | 40.656605 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 395 | 437 | 9.6424 | IPR000225 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_018831322.1 | U-box domain-containing protein 13-like [Juglans regia] | 0 |
| Q9SNC6 | U-box domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=PUB13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6RIU2 | RING-type E3 ubiquitin transferase OS=Carpinus fangiana OX=176857 GN=FH972_017398 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology