Basic Information
Locus ID:
Ceq08G1165
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 11105632 | 11109345 | + | Ceq08G1165 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.94 | 100,712.61 Da | 54.27 | 70.15 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 547 | 584 | 0.0014 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 506 | 542 | 7.7E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 682 | 717 | 0.018 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 392 | 423 | 1.8E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 387 | 721 | 2.6E-53 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 489 | 749 | 5.7E-47 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 347 | 468 | 1.0E-9 | IPR015943 |
| SMART | SM00320 | WD40_4 | 635 | 676 | 5.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 385 | 424 | 1.8E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 677 | 718 | 0.014 | IPR001680 |
| SMART | SM00320 | WD40_4 | 545 | 584 | 3.0E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 504 | 542 | 3.5E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 587 | 625 | 7.3 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 392 | 426 | 11.73468 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 551 | 593 | 12.279615 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 392 | 433 | 14.518635 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 697 | 717 | 8.570195 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 511 | 545 | 11.312864 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 551 | 585 | 10.205597 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 511 | 551 | 14.518635 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 529 | 543 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 411 | 425 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 529 | 543 | 1.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 571 | 585 | 1.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 411 | 425 | 1.3E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 355 | 374 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 99 | 144 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 453 | 484 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 104 | 143 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 773 | 798 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 753 | 801 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37670.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_035544515.1 | WD repeat-containing protein 44-like [Juglans regia] | 0 |
| Q5JSH3 | WD repeat-containing protein 44 OS=Homo sapiens OX=9606 GN=WDR44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5N6RM79 | WD_REPEATS_REGION domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_017390 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology