Basic Information
Locus ID:
Ceq08G1034
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 9663790 | 9671842 | + | Ceq08G1034 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.33 | 98,448.29 Da | 56.69 | 88.72 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 141 | 353 | 2.1E-5 | IPR004274 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 721 | 771 | 5.3E-7 | IPR014720 |
| SUPERFAMILY | SSF56784 | HAD-like | 131 | 385 | 1.98E-16 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 723 | 772 | 4.96E-11 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 715 | 782 | 1.7E-8 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 128 | 409 | 3.2E-25 | IPR023214 |
| SMART | SM00577 | forpap2 | 210 | 363 | 1.6E-9 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 710 | 772 | 4.1E-4 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 134 | 376 | 13.795206 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 736 | 773 | 12.280972 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 834 | 855 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 819 | 884 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 867 | 884 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01270.1 | carboxyl-terminal domain (ctd) phosphatase-like 2. Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses. | 0 |
| RefSeq | XP_018825887.1 | RNA polymerase II C-terminal domain phosphatase-like 2 isoform X1 [Juglans regia] | 0 |
| Q5YDB5 | RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana OX=3702 GN=CPL2 PE=1 SV=3 | 0 | |
| TrEMBL | A0A5N6RJK5 | protein-serine/threonine phosphatase OS=Carpinus fangiana OX=176857 GN=FH972_017220 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology