Basic Information
Locus ID:
Ceq08G0755
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 7109152 | 7116694 | + | Ceq08G0755 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.62 | 40,965.79 Da | 57.19 | 80.42 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14382 | UBA2_RAD23_plant | 332 | 374 | 1.41113E-23 | - |
| CDD | cd14379 | UBA1_Rad23_plant | 149 | 198 | 4.02106E-30 | - |
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 5.53773E-29 | - |
| Pfam | PF00627 | UBA/TS-N domain | 336 | 371 | 1.7E-11 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 1.3E-19 | IPR000626 |
| Pfam | PF09280 | XPC-binding domain | 256 | 311 | 3.0E-22 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 155 | 193 | 6.5E-14 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 316 | 378 | 6.32E-15 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 153 | 203 | 9.31E-12 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 253 | 317 | 3.79E-22 | IPR036353 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 91 | 2.43E-22 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 77 | 1.8E-27 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 247 | 311 | 1.2E-26 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 328 | 375 | 2.2E-22 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 148 | 198 | 5.5E-22 | - |
| SMART | SM00165 | uba_6 | 155 | 195 | 4.6E-5 | IPR015940 |
| SMART | SM00727 | CBM | 254 | 297 | 4.5E-4 | IPR006636 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 7.8E-20 | IPR000626 |
| SMART | SM00165 | uba_6 | 336 | 373 | 1.0E-8 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 379 | 3.8E-118 | IPR004806 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 76 | 20.370096 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 153 | 196 | 12.113146 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 333 | 374 | 14.812021 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 330 | 346 | 2.6E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 347 | 361 | 2.6E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 362 | 377 | 2.6E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 282 | 304 | 2.6E-34 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 86 | 140 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 86 | 118 | - | - |
| Coils | Coil | Coil | 283 | 303 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_042977694.1 | ubiquitin receptor RAD23c-like [Carya illinoinensis] | 0 |
| Q84L30 | Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2 | 0 | |
| TrEMBL | A0A5N6QXY6 | Ubiquitin receptor RAD23 OS=Carpinus fangiana OX=176857 GN=FH972_007930 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology