Basic Information
Locus ID:
Ceq08G0609
Species & Taxonomic ID:
Casuarina equisetifolia & 3523
Genome Assembly:
GCA_028551475.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr08 | 5604968 | 5606813 | + | Ceq08G0609 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.88 | 49,601.19 Da | 42.18 | 102.30 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 34 | 76 | 5.024E-26 | - |
| Pfam | PF04564 | U-box domain | 30 | 101 | 6.3E-22 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 26 | 105 | 7.07E-30 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 215 | 418 | 8.83E-13 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 15 | 107 | 2.4E-29 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 125 | 421 | 3.4E-13 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 33 | 96 | 9.2E-32 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 29 | 103 | 42.814953 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_041007703.1 | U-box domain-containing protein 21-like [Juglans microcarpa x Juglans regia] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5N6QYX7 | RING-type E3 ubiquitin transferase OS=Carpinus fangiana OX=176857 GN=FH972_007779 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology