halophFGD

Basic Information

Locus ID: Ceq08G0360

Species & Taxonomic ID: Casuarina equisetifolia & 3523

Genome Assembly: GCA_028551475.1

Description: Ubiquitin conjugation factor E4

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Chr08	3163989	3164685	-	Ceq08G0360

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.29	21,982.58 Da	39.97	102.45	0.25

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF04564	U-box domain	86	145	2.2E-15	IPR003613
SUPERFAMILY	SSF57850	RING/U-box	87	149	3.53E-13	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	84	155	1.1E-12	IPR013083
SMART	SM00504	Ubox_2	75	142	2.0E-6	IPR003613

Gene Ontology

Biological Process:

GO:0016567 (protein ubiquitination)

Molecular Function:

GO:0004842 (ubiquitin-protein transferase activity)

KEGG Pathway

KO Term:

K10596 (ubiquitin conjugation factor E4 A [EC:2.3.2.27])

Pathway:

ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G15400.1	U-box domain-containing protein.
RefSeq	XP_027359137.1	probable ubiquitin conjugation factor E4 isoform X2 [Abrus precatorius]
Swiss-Prot	Q9LF41	Probable ubiquitin conjugation factor E4 OS=Arabidopsis thaliana OX=3702 GN=PUB1 PE=2 SV=1
TrEMBL	A0A2H5PK96	U-box domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_144570 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Arecaceae	Cocos nucifera	1	COCNU_13G006030
Casuarinaceae	Casuarina equisetifolia	1	Ceq08G0360
Casuarinaceae	Casuarina glauca	1	Cgl08G0318
Poaceae	Echinochloa crus-galli	6	BH01.2372, BH04.1573, BH05.2523, BH06.661, BH07.3213 ... CH04.1487